PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g34340.1.p
Common NameBRADI_1g34340, LOC100822102
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1150aa    MW: 127564 Da    PI: 6.2933
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g34340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.1e-23149250199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  Bradi1g34340.1.p 149 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 237
                       99*****************************954.4444.48************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++++l+++++r+
  Bradi1g34340.1.p 238 DERQQLLLGIRRA 250
                       577788***9997 PP

2Auxin_resp114.87.7e-38275358183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Bradi1g34340.1.p 275 AAHADANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 358
                       78999*******************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
SuperFamilySSF1019361.83E-42137278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-42141264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-19148240No hitNo description
PROSITE profilePS5086311.899149251IPR003340B3 DNA binding domain
PfamPF023627.6E-21149250IPR003340B3 DNA binding domain
SMARTSM010197.4E-23149251IPR003340B3 DNA binding domain
PfamPF065072.2E-32275358IPR010525Auxin response factor
PfamPF023098.5E-1010141100IPR033389AUX/IAA domain
PROSITE profilePS5174525.96510151099IPR000270PB1 domain
SuperFamilySSF542771.86E-710301094No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MMKQQQQQPA PAPAVSSAAG AAVTVASLAG AGCEGEKKAP VINSELWHAC AGPLVSLPPA  60
GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY PNLPSKLICL LHNITLHADL ETDEVYAQMT  120
LQPVTSYGKE ALQLSELALK QSRPQNEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF  180
SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIFVRDER  240
QQLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHADA NNSPFTIFYN PRASPTEFVI  300
PFAKYQKAVY GNQLSLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG  360
WDESAAGERR NRVSIWEIEP VAAPFFICPP PFFGSKRPRQ LDDESSEMEN LLKRAMPWLG  420
EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ GSSFANTAMQ SEYLRSITNP SMQNIGSTDL  480
SRQLLQNQLL QQNNIQFNTP KLPQQMQPNN DLSKAALPLN QLGVSTKLQE QTQDASNLQR  540
QQQSMNYALP LSQAQTSLAQ AQVLVQNQMQ QQPMSQNQLP AASQPPLPQQ QQHQQQQQKL  600
LHQQQQQLLL QQQQLQQHNQ NQQQLNKMPA QLPNLANQQL QLSDQQLQLQ LLQKLQQQQQ  660
SFLSQPGVTL AQLPLIQEQQ RLLMDMQQQL SSSHSLTQQQ MMPQQSTKIP SQTTSMPLPM  720
QPDTQQKLPQ KQAVPADTSE AAVPPTTTLN FSSANGSPLR MPGATHSVVT EEIPSCSTSP  780
STANGNHLLQ PGTGRNQYCN MINTEKVPQS TPPMSVPSSL EVVTGPPRIA KELPKLTSNV  840
KQSMVASKLQ NAGAGPQNFV DNAPPTDYLE TASSATSVWL SQTDGLLHQS FPMSNFNQQP  900
MFKDAPPDTE IHADVPSNNT LFGISNDGQV GFPMGTDDFL TNGLDTAKYQ NHISTDIDNS  960
YIIPKDAQQE ISSSMVSQSF GASDMAFNSI DSGINDGTFF NRSSWPPAPP IKRMRTFTKV  1020
YKRGAVGRSI DISQYAGYDE LKHALARMFS IEGQLEERQR IGWKLVYRDH EDDILLLGDD  1080
PWEEFVNCVK YIRILSPQEV QQMSLDGDLG SNIIPNQACS SSDGGGNAWR ARCDQNSGNP  1140
STGSYDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1703837947388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3697130.0AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563519.10.0PREDICTED: auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLI1GWQ90.0I1GWQ9_BRADI; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19